Publications

PUBLICATION

Zic Genes in Nematodes: A Role in Nervous System Development and Wnt Signaling.

Bordet G, Bertrand V.
Adv Exp Med Biol. 2018;1046:59-68. doi: 10.1007/978-981-10-7311-3_4. PMID: 29442317

Polarization and binary cell fate decisions in the nervous system

PUBLICATION

SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

Prytuliak R, Pfeiffer F, Habermann BH.
BMC Bioinformatics. 2018 Jan 26;19(1):24. doi: 10.1186/s12859-018-2020-x. PMID: 29373955

Computational Biology

PUBLICATION

Two distinct mechanisms silence chinmo in Drosophila neuroblasts and neuroepithelial cells to limit their self-renewal

Dillard C, Narbonne-Reveau K, Foppolo S, Lanet E, Maurange C.
Development. 2018 Jan 25;145(2). pii: dev154534. doi: 10.1242/dev.154534. PMID: 29361557

Neural stem cell plasticity

PUBLICATION

The axolotl genome and the evolution of key tissue formation regulators.

Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, Myers EW.
Nature. 2018 Jan 24. doi: 10.1038/nature25458. PMID: 29364872

Computational Biology

PUBLICATION

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

Ramírez F, Bhardwaj V, Arrigoni L, Lam KC, Grüning BA, Villaveces J, Habermann B, Akhtar A, Manke T.
Nat Commun. 2018 Jan 15;9(1):189. doi: 10.1038/s41467-017-02525-w. PMID: 29335486

Computational Biology

PUBLICATION

The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains.

Pfeiffer F, Zamora-Lagos MA, Blettinger M, Yeroslaviz A, Dahl A, Gruber S, Habermann BH.
BMC Genomics. 2018 Jan 5;19(1):20. doi: 10.1186/s12864-017-4301-6. PMID: 29304740

Computational Biology

PUBLICATION

Viscoelastic Dissipation Stabilizes Cell Shape Changes during Tissue Morphogenesis

Raphaël Clément, Benoît Dehapiot, Claudio Collinet, Thomas Lecuit, Pierre-François Lenne
Current Biology

Tissue Architecture and Plasticity Physical approaches to cell dynamics and tissue morphogenesis

PUBLICATION

The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription.

Zouaz A, Auradkar A, Delfini MC, Macchi M, Barthez M, Ela Akoa S, Bastianelli L, Xie G, Deng WM, Levine SS, Graba Y, Saurin AJ.
EMBO J. 2017 Oct 2;36(19):2887-2906. doi: 10.15252/embj.201695751. PMID: 28871058

Mechanisms of gene regulation by transcription factors

PUBLICATION

Gene Tagging Strategies To Assess Protein Expression, Localization, and Function in Drosophila.

Kanca O, Bellen HJ, Schnorrer F.
Genetics. 2017 Oct;207(2):389-412. doi: 10.1534/genetics.117.199968. PMID: 28978772

Muscle Dynamics

PUBLICATION

Zic-proteins are repressors of dopaminergic forebrain fate in mice and C. elegans.

Tiveron MC, Beclin C, Murgan S, Wild S, Angelova A, Marc J, Coré N, de Chevigny A, Herrera E, Bosio A, Bertrand V, Harold C.
J Neurosci. 2017 Sep 29. pii: 3888-16. PMID: 28972122

Polarization and binary cell fate decisions in the nervous system Molecular control of neurogenesis

PUBLICATION

Oligopeptide Transporters of the SLC15 Family Are Dispensable for Peptidoglycan Sensing and Transport in Drosophila.

Capo F, Chaduli D, Viallat-Lieutaud A, Charroux B, Royet J.
J Innate Immun. 2017;9(5):483-492. doi: 10.1159/000475771. PMID: 28715804

Host pathogen interaction in the Drosophila model

PUBLICATION

Nodal–Activin pathway is a conserved neural induction signal in chordates

Yann Le Petillon, Guillaume Luxardi, Pierluigi Scerbo, Marie Cibois, Anthony Leon, Lucie Subirana, Manuel Irimia, Laurent Kodjabachian, Hector Escriva and Stephanie Bertrand
Nature Ecology & Evolution

Biology of ciliated epithelia

PUBLICATION

Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2.

Scerbo P, Marchal L, Kodjabachian L.
Elife. 2017 Jun 27;6. pii: e21526. PMID: 28654420

Biology of ciliated epithelia

PUBLICATION

A Phosphokinome-based screen uncovers new drug synergies for cancer driven by liver-specific gain of non-oncogenic RTKs

Fan Y, Arechederra M, Richelme S, Daian F, Novello C, Calderaro J, Di Tommaso L, Morcrette G, Rebouissou S, Donadon M, Morenghi E, Zucman-Rossi J, Roncalli M, Dono R, Maina F.
Hepatology. 2017 Jun 6. PMID: 28586114

Signalling networks for stemness and tumorigenesis

PUBLICATION

Patterned cortical tension mediated by N-cadherin controls cell geometric order in the Drosophila eye.

Chan EH, Chavadimane Shivakumar P, Clément R, Laugier E, Lenne PF.
Elife. 2017 May 24;6. pii: e22796. PMID: 28537220

Physical approaches to cell dynamics and tissue morphogenesis

PUBLICATION

HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons

Roman Prytuliak, Michael Volkmer, Markus Meier, Bianca H. Habermann
Nucleic Acids Res. 2017 Apr 29. PMID: 28460141

Computational Biology

PUBLICATION

AIDing-targeted protein degradation in Drosophila.

Zhang X, Schnorrer F.
FEBS J. 2017 Apr;284(8):1178-1181. PMID: 28382696

Muscle Dynamics

PUBLICATION

Hox functional diversity: Novel insights from flexible motif folding and plastic protein interaction

Ortiz-Lombardia M, Foos N, Maurel-Zaffran C, Saurin AJ, Graba Y.
Bioessays. 2017 Apr;39(4). doi: 10.1002/bies.201600246. PMID: 28092121

Mechanisms of gene regulation by transcription factors

PUBLICATION

Mechanical forces during muscle development

Lemke SB, Schnorrer F.
Mech Dev. 2017 Apr;144(Pt A):92-101. PMID: 27913119

Muscle Dynamics

PUBLICATION

Mechanical tension and spontaneous muscle twitching precede the formation of cross-striated muscle in vivo.

Weitkunat M, Brasse M, Bausch AR, Schnorrer F.
Development. 2017 Apr 1;144(7):1261-1272. http://www.pubmed.com/28174246/

Muscle Dynamics