Publications

PUBLICATION

Developmental Upregulation of Ephrin-B1 Silences Sema3C/Neuropilin-1 Signaling during Post-crossing Navigation of Corpus Callosum Axons.

Mire E, Hocine M, Bazellières E, Jungas T, Davy A, Chauvet S, Mann F.
Curr Biol. 2018 Jun 4;28(11):1768-1782.e4. doi: 10.1016/j.cub.2018.04.026. PMID: 29779877

Axon plasticity in development and cancer

PUBLICATION

A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle.

Spletter ML, Barz C, Yeroslaviz A, Zhang X, Lemke SB, Bonnard A, Brunner E, Cardone G, Basler K, Habermann BH, Schnorrer F.
Elife. 2018 May 30;7. pii: e34058. doi: 10.7554/eLife.34058. PMID: 29846170

Muscle Dynamics

PUBLICATION

Tissue-specific activities of the Fat1 cadherin cooperate to control neuromuscular morphogenesis.

Helmbacher F.
PLoS Biol. 2018 May 16;16(5):e2004734. doi: 10.1371/journal.pbio.2004734. PMID: 29768404

Development and pathologies of neuromuscular circuits

PUBLICATION

Quantitative Control of GPCR Organization and Signaling by Endocytosis in Epithelial Morphogenesis

Ankita Jha, Thomas S.van Zanten, Jean-Marc Philippe, Satyajit Mayor, Thomas Lecuit.
Curr Biol. 2018 May 21;28(10):1570-1584.e6. PMID: 29731302

Tissue Architecture and Plasticity

PUBLICATION

Ordering of myosin II filaments driven by mechanical forces: experiments and theory.

Dasbiswas K, Hu S, Schnorrer F, Safran SA, Bershadsky AD.
Philos Trans R Soc Lond B Biol Sci. 2018 May 26;373(1747). pii: 20170114. doi: 10.1098/rstb.2017.0114. PMID: 29632266

Muscle Dynamics

PUBLICATION

Promoting Myelin Repair through In Vivo Neuroblast Reprogramming

El Waly B, Cayre M, Durbec P.
Stem Cell Reports. 2018 May 8;10(5):1492-1504. doi: 10.1016/j.stemcr.2018.02.015. PMID: 29606615

Stem cells and brain repair

PUBLICATION

Polarization-resolved microscopy reveals a muscle myosin motor-independent mechanism of molecular actin ordering during sarcomere maturation.

Loison, Weitkunat M, Kaya-Çopur A, Nascimento Alves C, Matzat T, Spletter ML, Luschnig S, Brasselet S, Lenne PF, Schnorrer F.
PLoS Biol. 2018 Apr 27;16(4):e2004718. doi: 10.1371/journal.pbio.2004718. PMID: 29702642

Physical approaches to cell dynamics and tissue morphogenesis Muscle Dynamics

PUBLICATION

Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB).

Krempel R, Kulkarni P, Yim A, Lang U, Habermann B, Frommolt P.
BMC Bioinformatics. 2018 Apr 24;19(1):156. doi: 10.1186/s12859-018-2157-7. PMID: 29699486

Computational Biology

PUBLICATION

Promoting Myelin Repair through In Vivo Neuroblast Reprogramming.

El Waly B, Cayre M, Durbec P.
Stem Cell Reports. 2018 Mar 27. pii: S2213-6711(18)30106-1. doi: 10.1016/j.stemcr.2018.02.015. PMID: 29606615

PUBLICATION

The deregulated microRNAome contributes to the cellular response to aneuploidy.

Dürrbaum M, Kruse C, Nieken KJ, Habermann B, Storchová Z.
BMC Genomics. 2018 Mar 14;19(1):197. doi: 10.1186/s12864-018-4556-6. PMID: 29703144

Computational Biology

PUBLICATION

Tailoring drug release rates in hydrogel-based therapeutic delivery applications using graphene oxide

Puvirajesinghe TM, Zhi ZL, Craster RV, Guenneau S.
J R Soc Interface. 2018 Feb;15(139). pii: 20170949. doi: 10.1098/rsif.2017.0949. PMID: 29445040

PUBLICATION

Zic Genes in Nematodes: A Role in Nervous System Development and Wnt Signaling.

Bordet G, Bertrand V.
Adv Exp Med Biol. 2018;1046:59-68. doi: 10.1007/978-981-10-7311-3_4. PMID: 29442317

Polarization and binary cell fate decisions in the nervous system

PUBLICATION

In Vivo Imaging of Muscle-tendon Morphogenesis in Drosophila Pupae.

Lemke SB, Schnorrer F.
J Vis Exp. 2018 Feb 6;(132). doi: 10.3791/57312. PMID: 29443094

Muscle Dynamics

PUBLICATION

The elmo-mbc complex and rhogap19d couple Rho family GTPases during mesenchymal-to-epithelial-like transitions.

Toret CP, Shivakumar PC, Lenne PF, Le Bivic A.
Development. 2018 Feb 2. pii: dev.157495. doi: 10.1242/dev.157495. PMID: 29437779

Cell polarity and morphogenesis of epithelia

PUBLICATION

SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

Prytuliak R, Pfeiffer F, Habermann BH.
BMC Bioinformatics. 2018 Jan 26;19(1):24. doi: 10.1186/s12859-018-2020-x. PMID: 29373955

Computational Biology

PUBLICATION

Two distinct mechanisms silence chinmo in Drosophila neuroblasts and neuroepithelial cells to limit their self-renewal

Dillard C, Narbonne-Reveau K, Foppolo S, Lanet E, Maurange C.
Development. 2018 Jan 25;145(2). pii: dev154534. doi: 10.1242/dev.154534. PMID: 29361557

Neural stem cell plasticity

PUBLICATION

The axolotl genome and the evolution of key tissue formation regulators.

Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, Myers EW.
Nature. 2018 Jan 24. doi: 10.1038/nature25458. PMID: 29364872

Computational Biology

PUBLICATION

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

Ramírez F, Bhardwaj V, Arrigoni L, Lam KC, Grüning BA, Villaveces J, Habermann B, Akhtar A, Manke T.
Nat Commun. 2018 Jan 15;9(1):189. doi: 10.1038/s41467-017-02525-w. PMID: 29335486

Computational Biology

PUBLICATION

The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains.

Pfeiffer F, Zamora-Lagos MA, Blettinger M, Yeroslaviz A, Dahl A, Gruber S, Habermann BH.
BMC Genomics. 2018 Jan 5;19(1):20. doi: 10.1186/s12864-017-4301-6. PMID: 29304740

Computational Biology

PUBLICATION

Crumbs, Moesin and Yurt regulate junctional stability and dynamics for a proper morphogenesis of the Drosophila pupal wing epithelium.

Salis P, Payre F, Valenti P, Bazellieres E, Le Bivic A, Mottola G.
Sci Rep. 2017 Dec 1;7(1):16778. doi: 10.1038/s41598-017-15272-1. PMID: 29196707

Cell polarity and morphogenesis of epithelia